IMGT_SCHEMES

IMGT_V

IMGT_V_BY_REGIONS

IMGT_V_BY_REGIONS_NO_CDR3

IMGT_V_NO_CDR3


Definitions of the CDR and FWR, according to the IMGT unique numbering scheme.


Provides a computational framework for Bayesian estimation of
antigen-driven selection in immunoglobulin (Ig) sequences, providing an
intuitive means of analyzing selection by quantifying the degree of
selective pressure. Also provides tools to profile mutations in Ig
sequences, build models of somatic hypermutation (SHM) in Ig sequences,
and make model-dependent distance comparisons of Ig repertoires.

Jason Vander Heiden

shazam

Immunoglobulin Somatic Hypermutation Analysis

IMGT_SCHEMES function

A <a rd-options="" href="/link/RegionDefinition?package=shazam&version=0.1.4" data-mini-rdoc="shazam::RegionDefinition">RegionDefinition</a> object containing:
<ul>
<li>  <code>IMGT_V</code>:                     Grouped CDR and FWR V-segment regions including CDR3.
  </li>
<li>  <code>IMGT_V_BY_REGIONS</code>:          Individual CDR and FWR V-segment regions including CDR3.
  </li>
<li>  <code>IMGT_V_NO_CDR3</code>:             Grouped CDR and FWR V-segment regions excluding CDR3.
  </li>
<li>  <code>IMGT_V_BY_REGIONS_NO_CDR3</code>:  Individual CDR and FWR V-segment regions excluding CDR3.
</li>
</ul>

Format

A <a rd-options='' href='RegionDefinition'>RegionDefinition</a> object containing:
<ul>
<li>  <code>IMGT_V</code>:                     Grouped CDR and FWR V-segment regions including CDR3.
  </li>
<li>  <code>IMGT_V_BY_REGIONS</code>:          Individual CDR and FWR V-segment regions including CDR3.
  </li>
<li>  <code>IMGT_V_NO_CDR3</code>:             Grouped CDR and FWR V-segment regions excluding CDR3.
  </li>
<li>  <code>IMGT_V_BY_REGIONS_NO_CDR3</code>:  Individual CDR and FWR V-segment regions excluding CDR3.
</li>
</ul>

IMGT_SCHEMES: IMGT unique numbering schemes

Description

Arguments

Format

References