MC5_Methods

mc5_mthds


<code>mc5_mthds</code> returns a list of additional activity cutoff methods
to be used during level 5 multiple-concentration processing.


A set of tools for processing and modeling high-throughput and
high-content chemical screening data. The package was developed for the
the chemical screening data generated by the US EPA ToxCast program, but
can be used for diverse chemical screening efforts.

Dayne L Filer

tcpl

ToxCast Data Analysis Pipeline

MC5_Methods function

 More information about the level 5 multiple-concentration processing is
available in the package vignette, "Pipeline_Overview." <dl>
  <dt>bmad3</dt><dd>Add a cutoff value of 3*bmad.</dd> <dt>pc20</dt><dd>Add a cutoff value of 20.</dd> <dt>log2_1.2</dt><dd>Add a cutoff value of log2(1.2).</dd> <dt>log10_1.2</dt><dd>Add a cutoff value of log10(1.2).</dd> <dt>bmad5</dt><dd>Add a cutoff value of 5*bmad.</dd> <dt>bmad6</dt><dd>Add a cutoff value of 6*bmad.</dd> <dt>bmad10</dt><dd>Add a cutoff value of 10*bmad.</dd> <dt>log2_2</dt><dd>Add a cutoff value of log2(2).</dd> <dt>log10_2</dt><dd>Add a cutoff value of log10(2).</dd> <dt>neglog2_0.88</dt><dd>Add a cutoff value of -1*log2(0.88).</dd> </dl> 

MC5_Methods: Load list of level 5 multiple-concentration cutoff methods

Description

Usage

Arguments

Value

Available Methods

See Also