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VariantFiltering (version 1.4.3)

Filtering of coding and non-coding genetic variants

Description

Filter genetic variants using different criteria such as inheritance model, amino acid change consequence, minimum allele frequencies across human populations, splice site strength, conservation, etc.

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Version

1.4.3

License

Artistic-2.0

Issues

Pull Requests

Stars

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Repository

https://github.com/rcastelo/VariantFiltering/issues

Maintainer

Robert Castelo

Last Published

February 15th, 2017

Functions in VariantFiltering (1.4.3)

deNovo

De Novo variants analysis

VariantFiltering-deprecated

Deprecated functions in package ‘VariantFiltering’

autosomalRecessiveHeterozygous

Autosomal recessive inheritance analysis: Heterozygous

unrelatedIndividuals

Analysis designed to be applied over a group of unrelated individuals

readAAradicalChangeMatrix

Read matrix of amino acid radical changes

GenePhylostrataDb-class

PhastConsDb class

autosomalRecessiveHomozygous

Autosomal recessive inheritance analysis: Homozygous

autosomalDominant

Autosomal dominant inheritance analysis

WeightMatrix-class

Weight matrix class

VariantFilteringResults-class

VariantFilteringResults class

xLinked

X-Linked inheritance analysis

VariantFilteringParam-class

VariantFiltering parameter class

VariantFiltering-package

Filtering of coding and non-coding genetic variants