EBSeq (version 1.12.0)

f1: The Prior Predictive Distribution of being DE

Description

'f1' gives the Prior Predictive Distribution of DE.

Usage

f1(Input1, Input2, AlphaIn, BetaIn, EmpiricalRSP1, 
	EmpiricalRSP2, NumOfGroup, log)

Arguments

Input1

Expressions from Condition1.

Input2

Expressions from Condition2.

AlphaIn, BetaIn, EmpiricalRSP1, EmpiricalRSP2

The parameters estimated from last iteration of EM.

NumOfGroup

How many transcripts within each Ng group.

log

If true, will give the log of the output.

Value

The function will return the prior predictive distribution values of being DE.

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

See Also

f0

Examples

#f1(matrix(rnorm(100,100,1),ncol=10), 
#	matrix(rnorm(100,100,1),ncol=10), .5, .6, 
#	matrix(rnorm(100,200,1),ncol=10), 
#	matrix(rnorm(100,200,1),ncol=10), 100, TRUE)