Model: The Model class

Description

Package: aroma.affymetrix Class Model Object ~~| ~~+--Model Directly known subclasses: AffineCnPlm, AffinePlm, AffineSnpPlm, AlleleSummation, AvgCnPlm, AvgPlm, AvgSnpPlm, CrlmmModel, ExonRmaPlm, FirmaModel, HetLogAddCnPlm, HetLogAddPlm, HetLogAddSnpPlm, MbeiCnPlm, MbeiPlm, MbeiSnpPlm, MultiArrayUnitModel, ProbeLevelModel, RmaCnPlm, RmaPlm, RmaSnpPlm, SingleArrayUnitModel, UnitModel public abstract static class Model extends Object This class is abstract and represents a generic model that applies to a data set.

Usage

Model(dataSet=NULL, tags="*", ...)

Arguments

dataSet

The data set to which this model should be fitted.

Fields and Methods

Methods: rll{ fit Estimates the model parameters. getAlias Gets the name alias for the model. getAsteriskTags - getDataSet Gets the input data set for this model. getFullName Gets the full name of the output set. getName Gets the name of the output data set. getPath Gets the path of this model. getRootPath Gets the root path of this model. getTags Gets the tags of the output data set. setAlias Sets the name alias for the model. setTags Sets the tags to be appended. } Methods inherited from Object: asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save