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UniprotR (version 2.5.0)

Retrieving Information of Proteins from Uniprot

Description

Connect to Uniprot to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication .

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Version

Install

install.packages('UniprotR')

Monthly Downloads

577

Version

2.5.0

License

GPL-3

Issues

0

Pull Requests

3

Stars

68

Forks

18

Maintainer

Mohamed Soudy

Last Published

June 15th, 2025

Functions in UniprotR (2.5.0)

GetNamesTaxa

Connect and parse UniProt Names Taxa information.
GetMiscellaneous

Connect and parse UniProt Miscellaneous information.
Enrichment.REAC

Connect and parse UniProt information
ConvertID

Connect and parse UniProt database identifiers information.
GetproteinNetwork_all

Connect and parse stringdb information.
Goparse

Connect and parse UniProt information.
Enrichment.BP

Connect and parse UniProt information
GetFamily_Domains

Connect and parse UniProt Family Domains information.
GetGeneral_Information

Connect and parse UniProt General Information.
GetProteinInteractions

Connect and parse UniProt protein Interactions information.
GetProteinGOInfo

Connect and parse UniProt proteins gene ontology information.
GetProteinFunction

Connect and parse UniProt Protein Function information.
GetProteinAnnontate

Connect and parse UniProt information.
ProcessAcc

Connect and parse UniProt information.
plotGoannotation

Connect and parse UniProt information.
GetAccessionList

Connect and parse UniProt information.
GetStructureInfo

Connect and parse UniProt protein Structure information.
GetSubcellular_location

Connect and parse UniProt protein Subcellular location information.
PlotGoInfo

Connect and parse UniProt information.
PlotGoterms

Connect and parse UniProt information.
Plot.GOSubCellular

Connect and parse UniProt information.
GetSequences

Connect and parse UniProt Sequences information.
GetSequenceIso

Connect and parse UniProt Sequences information.
Plot.GOMolecular

Connect and parse UniProt information.
PlotProteinGO_bio

Connect and parse UniProt information.
PlotProteinGO_cel

Connect and parse UniProt information.
PlotproteinExist

Connect and parse UniProt information.
PlotproteinStatus

Connect and parse UniProt information.
GetExpression

Connect and parse UniProt Expression information.
GetpdbStructure

Connect and parse UniProt information.
GetproteinNetwork

Connect and parse stringdb information.
GetSeqLength

Connect and parse UniProt Sequences information.
GetPublication

Connect and parse UniProt Publication about a protein information.
PlotGOBiological

Connect and parse UniProt information.
PlotGenesNetwork

Connect and parse UniProt information.
HandleBadRequests

Handle bad requests This Function is used to handle possible errors when trying to get url response.
Pathway.Enr

Connect and parse UniProt information
PlotAcidity

Connect and parse UniProt information.
PlotChromosomeInfo

Connect and parse UniProt information.
PlotGravy

Connect and parse UniProt information.
PlotProteinGO_molc

Connect and parse UniProt information.
PlotCharge

Connect and parse UniProt information.
PlotPhysicochemical

Connect and parse UniProt information.
PlotProteinTaxa

Connect and parse UniProt information.
PlotGOAll

Connect and parse UniProt information.
ConstructGenesTree

Connect and parse UniProt information.
ConstructLocTree

Connect and parse UniProt information.
Enrichment.MF

Connect and parse UniProt information
GetPTM_Processing

Connect and parse UniProt PTM_Processsing information.
Enrichment.CC

Connect and parse UniProt information
GetPathology_Biotech

Connect and parse UniProt Pathology_Biotech information.
Enrichment.KEGG

Connect and parse UniProt information
GETSeqFastaUniprot

Connect and parse UniProt information.
Get.diseases

Connect and parse UniProt information.
GetProteomeFasta

Connect and DOWNLOAD Proteome info.
GetProteomeInfo

Connect and DOWNLOAD Proteome info.