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UniprotR (version 2.5.1)

Retrieving Information of Proteins from Uniprot

Description

Connect to Uniprot to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication .

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Version

Install

install.packages('UniprotR')

Monthly Downloads

1,230

Version

2.5.1

License

GPL-3

Issues

0

Pull Requests

3

Stars

72

Forks

18

Maintainer

Mohamed Soudy

Last Published

November 8th, 2025

Functions in UniprotR (2.5.1)

GetSequenceIso

Connect and parse UniProt Sequences information.
GetProteinFunction

Connect and parse UniProt Protein Function information.
GetProteinAnnontate

Connect and parse UniProt information.
GetSeqLength

Connect and parse UniProt Sequences information.
GetPublication

Connect and parse UniProt Publication about a protein information.
GetProteinInteractions

Connect and parse UniProt protein Interactions information.
GetProteomeInfo

Connect and DOWNLOAD Proteome info.
GetProteinGOInfo

Connect and parse UniProt proteins gene ontology information.
GetSequences

Connect and parse UniProt Sequences information.
GetpdbStructure

Connect and parse UniProt information.
GetproteinNetwork

Connect and parse stringdb information.
GetproteinNetwork_all

Connect and parse stringdb information.
Goparse

Connect and parse UniProt information.
GetExpression

Connect and parse UniProt Expression information.
HandleBadRequests

Handle bad requests This Function is used to handle possible errors when trying to get url response.
GetSubcellular_location

Connect and parse UniProt protein Subcellular location information.
GetStructureInfo

Connect and parse UniProt protein Structure information.
PlotAcidity

Connect and parse UniProt information.
Plot.GOMolecular

Connect and parse UniProt information.
PlotCharge

Connect and parse UniProt information.
Plot.GOSubCellular

Connect and parse UniProt information.
Pathway.Enr

Connect and parse UniProt information
PlotGoterms

Connect and parse UniProt information.
PlotPhysicochemical

Connect and parse UniProt information.
PlotGOBiological

Connect and parse UniProt information.
PlotProteinGO_bio

Connect and parse UniProt information.
PlotChromosomeInfo

Connect and parse UniProt information.
PlotGravy

Connect and parse UniProt information.
PlotGenesNetwork

Connect and parse UniProt information.
PlotProteinGO_cel

Connect and parse UniProt information.
PlotGOAll

Connect and parse UniProt information.
PlotGoInfo

Connect and parse UniProt information.
PlotproteinExist

Connect and parse UniProt information.
plotGoannotation

Connect and parse UniProt information.
PlotproteinStatus

Connect and parse UniProt information.
ProcessAcc

Connect and parse UniProt information.
PlotProteinGO_molc

Connect and parse UniProt information.
PlotProteinTaxa

Connect and parse UniProt information.
Enrichment.MF

Connect and parse UniProt information
ConvertID

Connect and parse UniProt database identifiers information.
Enrichment.CC

Connect and parse UniProt information
Enrichment.BP

Connect and parse UniProt information
Enrichment.KEGG

Connect and parse UniProt information
Get.diseases

Connect and parse UniProt information.
GETSeqFastaUniprot

Connect and parse UniProt information.
GetPTM_Processing

Connect and parse UniProt PTM_Processsing information.
GetPathology_Biotech

Connect and parse UniProt Pathology_Biotech information.
Enrichment.REAC

Connect and parse UniProt information
GetAccessionList

Connect and parse UniProt information.
GetMiscellaneous

Connect and parse UniProt Miscellaneous information.
GetProteomeFasta

Connect and DOWNLOAD Proteome info.
GetNamesTaxa

Connect and parse UniProt Names Taxa information.
ConstructGenesTree

Connect and parse UniProt information.
ConstructLocTree

Connect and parse UniProt information.
GetFamily_Domains

Connect and parse UniProt Family Domains information.
GetGeneral_Information

Connect and parse UniProt General Information.