Learn R Programming

SomaticSignatures (version 2.8.4)

Somatic Signatures

Description

The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.

Copy Link

Version

Version

2.8.4

License

MIT + file LICENSE

Issues

0

Pull Requests

0

Stars

22

Forks

7

Maintainer

Julian Gehring

Last Published

February 15th, 2017

Functions in SomaticSignatures (2.8.4)

motif-functions

Group somatic moticfs
mutation-distribution

Distributions of mutational locations.
hs-chrs

Human Chromosome Names
GRanges-converters

GRanges converter functions
gcContent

GC Content
cluster-spectrum

Cluster Mutational Spectrum
decomposition-signatures

Decomposition Functions for Somatic Signatures
kmers-data

Kmer datasets
mutationContext

mutationContext functions
kmerFrequency

Kmer Frequency
mutational-normalization

Normalize Somatic Motifs
mutational-plots

Mutational Plots
mutational-signatures

Estimate Somatic Signatures
signatures21-data

21 Signatures
signature-plots

Plot Mutational Signatures
SomaticSignatures

SomaticSignatures package
readMutect

readMutect
sca-data

SomaticCancerAlterations Results
variants-utils

Utility functions