NetworkCollection-class: protein interaction networks maintaining DNA loops
Description
The class NetworkCollection stores information about the set of protein networks that maintains DNA interactions.
Usage
NetworkCollection(networks, sizes, TFCollection)
Arguments
networks
a list of list, each list contains the set of edges in each network
sizes
the sizes of each network. The should correspond to the sizes of the networks
TFCollection
the set of all the TF involved in all the interactions.
Value
a NetworkCollection object.
Accesors
networks
gets the list of networks
sizes
gets the vector containing the size of each network
TF
gets the list of involved TF (after filtering)
Details
The NetworkCollection contains three main information:
(i) the set of edges in each network maintaining each DNA loop,
(ii) the number of edges in each network and (iii)
the set of TF involved in all the networks.
References
Mohamed Nadhir D, Yang C et al 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process, ....