NewickTree

A tree of class <code><a rd-options="ape:read.tree" href="/link/phylo?package=TreeTools&version=1.4.1&to=ape%3Aread.tree" data-mini-rdoc="ape:read.tree::phylo">phylo</a></code>.

tree

<code>NewickTree()</code> encodes a tree as a Newick-format string.
This differs from <code><a rd-options="ape:write.tree" href="/link/write.tree()?package=TreeTools&version=1.4.1&to=ape%3Awrite.tree" data-mini-rdoc="ape:write.tree::write.tree()">write.tree()</a></code> in the encoding of
spaces as spaces, rather than underscores.

Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.

Martin R. Smith

TreeTools

Create, Modify and Analyse Phylogenetic Trees

Emmanuel Paradis

NewickTree function

A tree of class <code><a rd-options='ape:read.tree' href='phylo'>phylo</a></code>.

<code>NewickTree()</code> encodes a tree as a Newick-format string.
This differs from <code><a rd-options='ape:write.tree' href='write.tree()'>write.tree()</a></code> in the encoding of
spaces as spaces, rather than underscores.

NewickTree: Write Newick Tree

Description

Usage

Arguments

Value

See Also

Examples