PSCBS (version 0.38.4)

NonPairedPSCBS: The NonPairedPSCBS class

Description

Package: PSCBS Class NonPairedPSCBS list ~~| ~~+--AbstractCBS ~~~~~~~| ~~~~~~~+--PSCBS ~~~~~~~~~~~~| ~~~~~~~~~~~~+--NonPairedPSCBS Directly known subclasses: public abstract static class NonPairedPSCBS extends PSCBS A NonPairedPSCBS is an object containing the results from the Non-paired PSCBS method.

Usage

NonPairedPSCBS(fit=list(), ...)

Arguments

fit

A list structure containing the Non-paired PSCBS results.

...

Not used.

Fields and Methods

Methods: No methods defined.

Methods inherited from PSCBS: append, as.data.frame, drawChangePoints, extractChromosomes, getLocusData, getLocusSignalNames, getSegmentTrackPrefixes, isSegmentSplitter, writeSegments

Methods inherited from AbstractCBS: adjustPloidyScale, all.equal, append, as.data.frame, drawChangePoints, drawKnownSegments, dropChangePoint, dropChangePoints, dropRegion, dropRegions, extractCNs, extractChromosome, extractChromosomes, extractRegions, extractSegments, getChromosomeOffsets, getChromosomeRanges, getChromosomes, getLocusData, getLocusSignalNames, getMeanEstimators, getSampleName, getSegmentSizes, getSegmentTrackPrefixes, getSegments, load, mergeThreeSegments, mergeTwoSegments, nbrOfChangePoints, nbrOfChromosomes, nbrOfLoci, nbrOfSegments, ploidy, ploidy<-, plotTracks, print, pruneByDP, pruneByHClust, renameChromosomes, report, resegment, resetSegments, sampleCNs, sampleName, sampleName<-, save, seqOfSegmentsByDP, setLocusData, setMeanEstimators, setPloidy, setSampleName, setSegments, shiftTCN, tileChromosomes, updateMeans

Methods inherited from list: all.equal, as.data.frame, attachLocally, callHooks, relist, within

See Also

The segmentByNonPairedPSCBS() method returns an object of this class.