Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--Transform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ProbeLevelTransform
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--BackgroundCorrection
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--LimmaBackgroundCorrection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--NormExpBackgroundCorrection
Directly known subclasses:
public static class NormExpBackgroundCorrection
extends LimmaBackgroundCorrection
This class represents the normal exponential background correction model.
Estimators of the NormExpBackgroundCorrection(..., method=c("rma", "saddle", "mle"))LimmaBackgroundCorrection.normexp.method
of backgroundCorrect in Methods inherited from LimmaBackgroundCorrection: getAsteriskTags, getParameters, process
Methods inherited from BackgroundCorrection: getParameters, process
Methods inherited from ProbeLevelTransform: getRootPath
Methods inherited from Transform: getOutputDataSet, getOutputFiles
Methods inherited from AromaTransform: as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags
Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString
Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis
backgroundCorrect is used.