OpticalBackgroundCorrection: The OpticalBackgroundCorrection class

Description

Package: aroma.affymetrix Class OpticalBackgroundCorrection

Object ~~| ~~+--ParametersInterface ~~~~~~~| ~~~~~~~+--AromaTransform ~~~~~~~~~~~~| ~~~~~~~~~~~~+--Transform ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--ProbeLevelTransform ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--BackgroundCorrection ~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~+--OpticalBackgroundCorrection

Directly known subclasses:

public static class OpticalBackgroundCorrection extends BackgroundCorrection

This class represents "optical" background adjustment.

Usage

OpticalBackgroundCorrection(..., minimum=1)

Arguments

...

Arguments passed to the constructor of ProbeLevelTransform.

minimum

The minimum signal allowed after adjustment.

Fields and Methods

Methods:

	`process`
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Methods inherited from BackgroundCorrection: getParameters, process Methods inherited from ProbeLevelTransform: getRootPath Methods inherited from Transform: getOutputDataSet, getOutputFiles Methods inherited from AromaTransform: as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis