This function calculates principal coordinates analysis using a distante
matrix among a set of objets.
Usage
PCoA(dis, r = 2)
Arguments
dis
Distance matrix between a set ob objects.
r
Number of dimensions for the solution.
Value
An object with has some components:
EigenValues
Eigenvalues of the inner products matrix
Inertia
Variance (Inertia) accounted for each dimension
RowCoordinates
Coordinates for the rows in the reduced space
RowQualities
Qualities of representation of the objects. Squared cosines between the points (vectors) in the full space and the points in the reduced space. Values near 1 indicate good quality
References
Gower,J.C. (1966) Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika, 53, 325--338.