PICalc

Name of the input file, with the extension (e.g. 'glyptemys3.arp')

datafile

Number of digit per allele in the input file. Default is 3.

ndigit

This function computes the PIC (Botstein et al. 1980) of each locus.

~kwd1

~kwd2

There are two main purposes to this package. The first is
to allow batch conversion of Genepop (Rousset 2008) input files
for use with Arlequin (Excoffier and Lischer 2010), which has a
simple GUI to analyze batch files. Two commonly used simulation
software, BottleSim (Kuo & Janzen 2003) and Easypop (Balloux
2001) produce Genepop output files that can be analyzed this
way. There are also functions to convert to and from BottleSim
format, to quickly produce allele frequency tables or to
convert a file directly for use in ordination analyses (e.g.
principal component analysis). This package also includes
functions to calculate allele rarefaction curves, confidence
intervals on heterozygosity and allelic richness with
resampling strategies (bootstrap and jackknife).

PICalc: Compute the polymorphism infomration content (PIC) of each locus in a Arlequin project file (.arp)

Description

Usage

Arguments

Value

Details

References

See Also