Description
Package: PSCBS
Class PSCBS
list
~~|
~~+--AbstractCBS
~~~~~~~|
~~~~~~~+--PSCBS
Directly known subclasses:
PairedPSCBS
public abstract static class PSCBS
extends AbstractCBS
A PSCBS is an object containing results from parent-specific copy-number
(PSCN) segmentation.Usage
PSCBS(fit=list(), ...)
Arguments
fit
A list structure containing the PSCN segmentation results. Fields and Methods
Methods:
rll{
append Appends one segmentation result to another.
writeSegments Writes the table of segments to file.
}
Methods inherited from AbstractCBS:
all.equal, append, as.data.frame, drawChangePoints, dropChangePoint, dropChangePoints, dropRegion, dropRegions, extractChromosome, extractChromosomes, extractCNs, extractRegions, extractSegments, getChromosomes, getLocusData, getSampleName, getSegments, getSegmentSizes, load, mergeThreeSegments, mergeTwoSegments, nbrOfChangePoints, nbrOfChromosomes, nbrOfLoci, nbrOfSegments, plotTracks, print, pruneByHClust, renameChromosomes, resegment, sampleCNs, sampleName, sampleName<-, save, setLocusData, setSampleName, setSegments, tileChromosomes, updateMeans
Methods inherited from list:
all.equal, as.data.frame, attachLocally, callHooks, relist, within