PSCBS (version 0.38.4)

PSCBS: The PSCBS class

Description

Package: PSCBS Class PSCBS list ~~| ~~+--AbstractCBS ~~~~~~~| ~~~~~~~+--PSCBS Directly known subclasses: NonPairedPSCBS, PairedPSCBS public abstract static class PSCBS extends AbstractCBS A PSCBS is an object containing results from parent-specific copy-number (PSCN) segmentation.

Usage

PSCBS(fit=list(), ...)

Arguments

fit

A list structure containing the PSCN segmentation results.

...

Not used.

Fields and Methods

Methods: rll{ append Appends one segmentation result to another. writeSegments Writes the table of segments to file. }

Methods inherited from AbstractCBS: adjustPloidyScale, all.equal, append, as.data.frame, drawChangePoints, drawKnownSegments, dropChangePoint, dropChangePoints, dropRegion, dropRegions, extractCNs, extractChromosome, extractChromosomes, extractRegions, extractSegments, getChromosomeOffsets, getChromosomeRanges, getChromosomes, getLocusData, getLocusSignalNames, getMeanEstimators, getSampleName, getSegmentSizes, getSegmentTrackPrefixes, getSegments, load, mergeThreeSegments, mergeTwoSegments, nbrOfChangePoints, nbrOfChromosomes, nbrOfLoci, nbrOfSegments, ploidy, ploidy<-, plotTracks, print, pruneByDP, pruneByHClust, renameChromosomes, report, resegment, resetSegments, sampleCNs, sampleName, sampleName<-, save, seqOfSegmentsByDP, setLocusData, setMeanEstimators, setPloidy, setSampleName, setSegments, shiftTCN, tileChromosomes, updateMeans

Methods inherited from list: all.equal, as.data.frame, attachLocally, callHooks, relist, within

See Also

PairedPSCBS.