PermutationOrder-class

.PermutationOrder

An S4 class to represent a permutation order.

An easy way to examine archaeological count data. This package
provides a convenient and reproducible toolkit for relative and absolute
dating and analysis of (chronological) patterns. It includes functions for
matrix seriation (reciprocal ranking, CA-based seriation), chronological
modeling and dating of archaeological assemblages and/or objects.
Beyond these, the package provides several tests and measures of diversity:
heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.),
richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.),
turnover and similarity (Brainerd-Robinson, etc.).
The package make it easy to visualize count data and statistical thresholds:
rank vs. abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams.

Nicolas Frerebeau

tabula

Analysis, Seriation and Visualization of Archaeological Count
Data

Brice Lebrun

Matthew Peeples

Ben Marwick

Anne Philippe

Jean-Baptiste Fourvel

PermutationOrder-class function

<dl class="dl-horizontal">
<dt><code>id</code></dt><dd>A <code><a rd-options="" href="/link/character?package=tabula&version=1.5.1" data-mini-rdoc="tabula::character">character</a></code> string specifying the unique
identifier of the corresponding matrix (UUID v4).</dd></dl><dt><code>rows</code></dt><dd>An <code><a rd-options="" href="/link/integer?package=tabula&version=1.5.1" data-mini-rdoc="tabula::integer">integer</a></code> vector giving the rows permutation.</dd><dt><code>columns</code></dt><dd>An <code><a rd-options="" href="/link/integer?package=tabula&version=1.5.1" data-mini-rdoc="tabula::integer">integer</a></code> vector giving the columns permutation.</dd><dt><code>method</code></dt><dd>A <code><a rd-options="" href="/link/character?package=tabula&version=1.5.1" data-mini-rdoc="tabula::character">character</a></code> string indicating the seriation
method used.</dd>

Slots

<dl class="dl-horizontal">
 <dt><code>x[[i]]</code></dt><dd>Extracts informations from a slot selected by
 subscript <code>i</code>. <code>i</code> should be one of "<code>id</code>",
 "<code>rows</code>", "<code>columns</code>" or "<code>method</code>". Any unambiguous
 substring can be given.</dd>
 </dl>

PermutationOrder-class: Permutation order

Description

Arguments

Slots

Subset

See Also