PhyDat2Morphy

An object of class <code><a rd-options="" href="/link/phyDat?package=TreeSearch&version=0.2.2" data-mini-rdoc="TreeSearch::phyDat">phyDat</a></code>.

Creates a new Morphy object with the same size and characters as the phyDat object

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Emmanuel Paradis

Klaus Schliep

Martin Brazeau

PhyDat2Morphy function

An object of class <code><a rd-options='' href='phyDat'>phyDat</a></code>.

PhyDat2Morphy: Initialize a Morphy Object from a phyDat object

Description

Usage

Arguments

Value