retistruct (version 0.6.3)

RetinalReconstructedOutline: A version of ReconstructedOutline that is specific to retinal datasets

Description

A RetinalReconstructedOutline overrides methods of ReconstructedOutline so that they return data point and landmark coordinates that have been transformed according to the values of DVflip and side. When reconstructing, it also computes the “Optic disc displacement”, i.e. the number of degrees subtended between the optic disc and the pole.

Super classes

retistruct::OutlineCommon -> retistruct::ReconstructedOutline -> RetinalReconstructedOutline

Public fields

EOD

Optic disc displacement in degrees

Methods

Public methods

• RetinalReconstructedOutline$getIms()

• RetinalReconstructedOutline$getTearCoords()

• RetinalReconstructedOutline$reconstruct()

• RetinalReconstructedOutline$getFeatureSet()

• RetinalReconstructedOutline$clone()

• retistruct::OutlineCommon$clearFeatureSets()

• retistruct::OutlineCommon$getFeatureSets()

• retistruct::OutlineCommon$getFeatureSetTypes()

• retistruct::OutlineCommon$getIDs()

• retistruct::ReconstructedOutline$getPoints()

• retistruct::ReconstructedOutline$getStrains()

• retistruct::ReconstructedOutline$loadOutline()

• retistruct::ReconstructedOutline$mapFlatToSpherical()

• retistruct::ReconstructedOutline$mergePointsEdges()

• retistruct::ReconstructedOutline$optimiseMapping()

• retistruct::ReconstructedOutline$optimiseMappingCart()

• retistruct::ReconstructedOutline$projectToSphere()

• retistruct::ReconstructedOutline$reconstructFeatureSets()

• retistruct::ReconstructedOutline$transformImage()

Method getIms()

Get coordinates of corners of pixels of image in spherical coordinates, transformed according to the value of DVflip

Usage

RetinalReconstructedOutline$getIms()

Returns

Coordinates of corners of pixels in spherical coordinates

Method getTearCoords()

Get location of tear coordinates in spherical coordinates, transformed according to the value of DVflip

Usage

RetinalReconstructedOutline$getTearCoords()

Returns

Location of tear coordinates in spherical coordinates

Method reconstruct()

Usage

RetinalReconstructedOutline$reconstruct(...)

Arguments

...

Parameters to ReconstructedOutline

Method getFeatureSet()

Get ReconstructedFeatureSet, transformed according to the value of DVflip

Usage

RetinalReconstructedOutline$getFeatureSet(type)

Arguments

type

Base type of FeatureSet as string. E.g. PointSet returns a ReconstructedPointSet

Method clone()

The objects of this class are cloneable with this method.

Usage

RetinalReconstructedOutline$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.