drc (version 1.5-5)

S.capricornutum: Effect of cadmium on growth of green alga

Description

Green alga (Selenastrum capricornutum) was exposed to cadmium chloride concentrations ranging from 5 to 80 micro g/L in geometric progression in 4-day population growth test.

Usage

data(S.capricornutum)

source

Bruce, R. D. and Versteeg, D. J. (1992) A statistical procedure for modeling continuous toxicity data, Environ. Toxicol. Chem., 11, 1485--1494.

Details

The data are analysed in Bruce and Versteeg (1992) using a log-normal dose-response model (using the logarithm with base 10).

Examples

## Fitting 3-parameter log-normal model
s.cap.m1 <- drm(count~conc, data=S.capricornutum, fct=LN.3())

## Residual plot
plot(fitted(s.cap.m1), residuals(s.cap.m1))

## Fitting model with transform-both-sides approach
s.cap.m2 <- drm(count~conc, data=S.capricornutum, fct=LN.3(), adjust="bc1")
summary(s.cap.m2)

## Residual plot after transformation (looks better)
plot(fitted(s.cap.m2), residuals(s.cap.m2))

## Calculating ED values on log scale (not so interesting)
ED(s.cap.m2, c(10, 20, 50), ci="delta")

## Calculating ED values on the original
ED(s.cap.m2, c(10, 20, 50), ci="fls")

## Fitting model with ED50 as parameter
s.cap.m3<-drm(count~conc, data=S.capricornutum, fct=LN.3(loge=FALSE), adjust="bc1")
ED(s.cap.m3, c(10, 20, 50), ci="delta")