Usage
SSgetMCMC(dir = NULL, verbose = TRUE, writecsv = FALSE,
csv1 = "keyposteriors.csv", csv2 = "nuisanceposteriors.csv",
keystrings = c("NatM", "R0", "steep", "RecrDev_2008", "Q_extraSD"),
nuisancestrings = c("Objective_function", "SPB_", "InitAge", "RecrDev"),
modelnames = "default", burnin = 0, thin = 1)Arguments
dir
A string (or vector of strings) of the directory (or directories)
with MCMC output.
verbose
TRUE/FALSE switch to get more or less information about the progress
of the function.
writecsv
Write key parameters and certainty nuisance quantities to a CSV file.
csv1
First CSV file for key parameters.
csv2
Second CSV file for nuisance quantities.
keystrings
Vector of strings that partially match parameter names to write to
the file csv1. This file intended to feed into
mcmc.out. nuisancestrings
Vector of strings that partially match derived quantity names to
write to the file csv2. This file intended to feed into
mcmc.nuisance. modelnames
Either "default" or a vector of names to use in naming elements of
list that is output by the function. Default is "model1", "model2",
etc.
burnin
Optional burn-in value to apply on top of the option in the
starter file.
thin
Optional thinning value to apply on top of the option in the
starter file and in the -mcsave runtime command.