r4ss (version 1.36.1)

SSsummarize: Summarize the output from multiple Stock Synthesis models.

Description

Summarize various quantities from the model output collected by SSgetoutput and return them in a list of tables and vectors.

Usage

SSsummarize(biglist, sizeselfactor = "Lsel", ageselfactor = "Asel",
  selfleet = NULL, selyr = "startyr", selgender = 1,
  SpawnOutputUnits = NULL, lowerCI = 0.025, upperCI = 0.975)

Arguments

biglist

A list of lists, one for each model. The individual lists can be created by SS_output or the list of lists can be created by SSgetoutput (which iteratively calls SS_output).

sizeselfactor

A string or vector of strings indicating which elements of the selectivity at length output to summarize. Default=c("Lsel").

ageselfactor

A string or vector of strings indicating which elements of the selectivity at age output to summarize. Default=c("Asel").

selfleet

Vector of fleets for which selectivity will be summarized. NULL=all fleets. Default=NULL.

selyr

String or vector of years for which selectivity will be summarized. NOTE: NOT CURRENTLY WORKING. Options: NULL=all years, "startyr" = first year.

selgender

Vector of genders (1 and/or 2) for which selectivity will be summarized. NULL=all genders. Default=NULL.

SpawnOutputUnits

Optional single value or vector of "biomass" or "numbers" giving units of spawning for each model.

lowerCI

Quantile for lower bound on calculated intervals. Default = 0.025 for 95% intervals.

upperCI

Quantile for upper bound on calculated intervals. Default = 0.975 for 95% intervals.

See Also

SSgetoutput