sequoia (version 2.3.5)

SeqOUT_griffin: Example sequoia output (griffins)

Description

Example output of a sequoia run including sibship clustering, based on the griffin pedigree.

Usage

data(SeqOUT_griffin)

Format

a list, see sequoia

See Also

Ped_griffin, sequoia

Examples

# NOT RUN {
GenoS <- SimGeno(Ped.griffin, nSnp=400, ParMis=0.4)
griffin.sex <- sapply(as.character(Ped_griffin$id), function(x)
                      substr(x, start=nchar(x), stop=nchar(x)))
LH.griffin <- data.frame(ID = Ped_griffin$id,
                         Sex = ifelse(griffin.sex=="F", 1, 2),
                         BirthYear = Ped_griffin$birthyear)
SeqOUT.GX <- sequoia(GenoS, LH.griffin,
                     Module = "ped",
                     args.AP = list(Smooth = FALSE))
# }