SetMorphyWeights

A vector listing the new weights to be applied to each character

weight

Object of class <code>morphy</code>, perhaps created with
<code><a rd-options="=PhyDat2Morphy" href="/link/PhyDat2Morphy()?package=TreeSearch&version=0.4.0&to=%3DPhyDat2Morphy" data-mini-rdoc="=PhyDat2Morphy::PhyDat2Morphy()">PhyDat2Morphy()</a></code>.

morphyObj

Whether to sanity-check input data before applying.
Defaults to TRUE to protect the user from crashes.

checkInput

Set the character weightings associated with a Morphy object

Searches for phylogenetic trees that are optimal using a
user-defined criterion.
Handles inapplicable data using the algorithm of
Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.
Implements Profile Parsimony (Faith and Trueman, 2001)
<doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969)
<doi:10.2307/2412182>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Martin Brazeau

SetMorphyWeights function

Object of class <code>morphy</code>, perhaps created with
<code><a rd-options='=PhyDat2Morphy' href='PhyDat2Morphy()'>PhyDat2Morphy()</a></code>.

SetMorphyWeights: Set the character weightings associated with a Morphy object

Description

Usage

Arguments

Value

See Also