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Object
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ChromosomalModel
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SmoothMultiarrayModel
Directly known subclasses:
SmoothRmaModel, SmoothSaModel
public abstract static class SmoothMultiarrayModel
extends ChromosomalModel
This abstract class represents a chromosomal smoothing method done
chromosome by chromosome.SmoothMultiarrayModel(..., typoOfWeights=c("none", "1/s2"), bandwidth=10000, tags="*")
ChromosomalModel
.character
string.numeric
specifying the smoothing bandwidth
in units of nucleotides.clearCache
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createOutputTuple
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fitOneChromosome
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getBandwidth
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getFitUnitGroupFunction
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getOutputTuple
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getRootPath
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setBandwidth
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}
Methods inherited from ChromosomalModel:
getListOfGenomeInformations, getPcuTheta, getPositionChipTypeUnit, as.character, clearCache, fit, getAlias, getAromaGenomeTextFile, getAsteriskTags, getChipType, getChipTypes, getChromosomes, getFullName, getFullNames, getGenome, getGenomeData, getGenomeFile, getListOfAromaUgpFiles, getName, getNames, getParentPath, getPath, getReportPath, getRootPath, getSets, getSetTuple, getTags, indexOf, nbrOfArrays, nbrOfChipTypes, setGenome
Methods inherited from Object:
asThis, getChecksum, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, saveCopyNumberSegmentationModel
.