aroma.affymetrix (version 3.0.0)

SmoothMultiarrayModel: The SmoothMultiarrayModel class

Description

Package: aroma.affymetrix Class SmoothMultiarrayModel

Object ~~| ~~+--ChromosomalModel ~~~~~~~| ~~~~~~~+--SmoothMultiarrayModel

Directly known subclasses: SmoothRmaModel, SmoothSaModel

public abstract static class SmoothMultiarrayModel extends ChromosomalModel

This abstract class represents a chromosomal smoothing method done chromosome by chromosome.

Usage

SmoothMultiarrayModel(..., typoOfWeights=c("none", "1/s2"), bandwidth=10000, tags="*")

Arguments

...

Arguments passed to the constructor of ChromosomalModel.

typoOfWeights

A character string.

bandwidth

A single numeric specifying the smoothing bandwidth in units of nucleotides.

tags

A character vector of tags to be added.

Fields and Methods

Methods:

	getBandwidth
-
getOutputTuple	-
	setBandwidth
-

Methods inherited from ChromosomalModel: as.character, fit, getAlias, getAromaGenomeTextFile, getAsteriskTags, getChipType, getChipTypes, getChromosomes, getFullName, getFullNames, getGenome, getGenomeData, getGenomeFile, getListOfAromaUgpFiles, getName, getNames, getParentPath, getPath, getReportPath, getRootPath, getSetTuple, getSets, getTags, indexOf, nbrOfArrays, nbrOfChipTypes, setChromosomes, setGenome, getListOfGenomeInformations, getPcuTheta, getPositionChipTypeUnit Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis

See Also

CopyNumberSegmentationModel.