SnpChipEffectGroupMerge: The SnpChipEffectGroupMerge class

Description

Package: aroma.affymetrix Class SnpChipEffectGroupMerge

Object ~~| ~~+--ParametersInterface ~~~~~~~| ~~~~~~~+--AromaTransform ~~~~~~~~~~~~| ~~~~~~~~~~~~+--Transform ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--ChipEffectTransform ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--ChipEffectGroupMerge ~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~+--SnpChipEffectGroupMerge

Directly known subclasses:

public static class SnpChipEffectGroupMerge extends ChipEffectGroupMerge

This class represents a method that merges SNP chip effects across groups unit by unit.

Usage

SnpChipEffectGroupMerge(..., mergeStrands=FALSE, mean=c("arithmetic", "geometric"))

Arguments

...

Arguments passed to the constructor of ChipEffectGroupMerge.

mergeStrands

If TRUE, group strands are merged.

mean

A character string specifying what type of averaging should be applied.

Fields and Methods

Methods:

	`getMergeFunction`
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Methods inherited from ChipEffectGroupMerge: getCdf, getMergeFunction, getParameters, process, setMergeFunction Methods inherited from ChipEffectTransform: getRootPath Methods inherited from Transform: getOutputDataSet, getOutputFiles Methods inherited from AromaTransform: as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis