SpatialReporter: The SpatialReporter class
Description
Package: aroma.affymetrix
Class SpatialReporter
Object
~~|
~~+--GenericReporter
~~~~~~~|
~~~~~~~+--AffymetrixFileSetReporter
~~~~~~~~~~~~|
~~~~~~~~~~~~+--AffymetrixCelSetReporter
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--SpatialReporter
Directly known subclasses:
public abstract static class SpatialReporter
extends AffymetrixCelSetReporter
A SpatialReporter generates image files of spatial representations of
cell signals for each of the arrays in the input set.Usage
SpatialReporter(..., reference=NULL)
Fields and Methods
Methods:
rll{
addColorMap -
calculateMargins -
getColorMaps -
plotMargins -
process Generates image files, scripts and dynamic pages for the explorer.
readRawDataRectangle -
setColorMaps -
}
Methods inherited from AffymetrixCelSetReporter:
getChipType, getDataSet, getPath, nbrOfArrays
Methods inherited from AffymetrixFileSetReporter:
getFileSet, getInputName, getInputTags
Methods inherited from GenericReporter:
getAlias, getAsteriskTags, getFullName, getInputName, getInputTags, getMainPath, getName, getPath, getReportSet, getTags, process, setAlias, setup
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save