SpatialReporter: The SpatialReporter class

Description

Package: aroma.affymetrix Class SpatialReporter Object ~~| ~~+--GenericReporter ~~~~~~~| ~~~~~~~+--AffymetrixFileSetReporter ~~~~~~~~~~~~| ~~~~~~~~~~~~+--AffymetrixCelSetReporter ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--SpatialReporter Directly known subclasses: public abstract static class SpatialReporter extends AffymetrixCelSetReporter A SpatialReporter generates image files of spatial representations of cell signals for each of the arrays in the input set.

Usage

SpatialReporter(..., reference=NULL)

Arguments

...

Arguments passed to AffymetrixCelSetReporter.

reference

An optional reference AffymetrixCelFile.

Fields and Methods

Methods: rll{ addColorMap - getColorMaps - plotMargins - process Generates image files, scripts and dynamic pages for the explorer. setColorMaps - }

Methods inherited from AffymetrixCelSetReporter: as.character, getChipType, getDataSet, getPath, nbrOfArrays

Methods inherited from AffymetrixFileSetReporter: getFileSet, getInputName, getInputTags

Methods inherited from GenericReporter: as.character, getAlias, getAsteriskTags, getFullName, getInputName, getInputTags, getMainPath, getName, getPath, getReportSet, getRootPath, getTags, process, setAlias, setup

Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis