X.snp.matrix-class

initialize,X.snp.matrix-method

[,X.snp.matrix-method

[<-,X.snp.matrix,ANY,ANY,X.snp.matrix-method

coerce,X.snp.matrix,character-method

coerce,snp.matrix,X.snp.matrix-method

show,X.snp.matrix-method

summary,X.snp.matrix-method

This class extends the  <code><a href="/link/snp.matrix-class?package=snpMatrix&version=1.19.24" rd-options="" data-mini-rdoc="snpMatrix::snp.matrix-class">snp.matrix-class</a></code> to
    deal with SNPs on the X chromosome.

classes

Implements classes and methods for large-scale SNP association studies 

David Clayton

snpMatrix

The snp.matrix and X.snp.matrix classes

X.snp.matrix-class function

Objects can be created by calls of the form <code>new("X.snp.matrix", x,
  Female)</code>.
Such objects have an additional <code>slot</code> to objects of class
<code>"snp.matrix"</code>
consisting of  a logical array of the same length as the number of
rows. This array indicates whether the sample corresponding to that row
came from a female (<code>TRUE</code>) or a male (<code>FALSE</code>).

Objects from the Class

Class <code>"snp.matrix"</code>, directly, with explicit coerce.
Class <code>"matrix"</code>, by class <code>"snp.matrix"</code>.
Class <code>"structure"</code>, by class <code>"snp.matrix"</code>.
Class <code>"array"</code>, by class <code>"snp.matrix"</code>.
Class <code>"vector"</code>, by class "snp.matrix", with explicit coerce.
Class <code>"vector"</code>, by class "snp.matrix", with explicit coerce.

Extends

This class extends the  <code><a href="snp.matrix-class" rd-options="">snp.matrix-class</a></code> to
    deal with SNPs on the X chromosome.

X.snp.matrix-class: Class "X.snp.matrix"

Description

Arguments

Objects from the Class

Extends

References

See Also

Examples