camtrapR (version 0.99.0)

activityHistogram: Plot histogram of single-species activity

Description

The function generates a histogram of species diel activity in 1-hour intervals.

Usage

activityHistogram(recordTable, 
	species, 
	allSpecies = FALSE, 
	speciesCol = "Species", 
	recordDateTimeCol = "DateTimeOriginal", 
	recordDateTimeFormat = "%Y-%m-%d %H:%M:%S", 
	plotR = TRUE, 
	writePNG = FALSE, 
	plotDirectory, 
	createDir = FALSE, 
	pngMaxPix = 1000,
	...)

Arguments

recordTable

data.frame. the record table created by recordTable

species

Name of the single species for which to create a histogram of activity

allSpecies

logical. Create plots for all species in speciesCol of recordTable? Overrides argument species

speciesCol

character. name of the column specifying species names in recordTable

recordDateTimeCol

character. name of the column specifying date and time in recordTable

recordDateTimeFormat

character. format of column recordDateTimeCol in recordTable

plotR

logical. Show plots in R graphics device?

writePNG

logical. Create pngs of the plots?

plotDirectory

character. Directory in which to create png plots if writePNG = TRUE

createDir

logical. Create plotDirectory?

pngMaxPix

integer. image size of png (pixels along x-axis)

...

additional arguments to be passed to function hist

Value

• It returns invisibly a vector of species record date and time in POSIXlt format. If allSpecies == TRUE, all species' vectors are returned in an invisible named list.

Details

Activity is calculated from the time of day of records. The date is ignored.

See Also

activityDensity, activityRadial, activityOverlap

Examples

# load record table
data(recordTableSample)

# generate activity histogram
species4activity <- "VTA"    # = Viverra tangalunga, Malay Civet

activityHistogram (recordTable = recordTableSample,
                   species     = species4activity,
                   allSpecies = FALSE)