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grainscape

Efficient Modelling of Landscape Connectivity, Habitat, and Protected Area Networks

Given a landscape resistance surface, creates grains of connectivity and minimum planar graph models that can be used to calculate effective distances for landscape connectivity at multiple scales. This is a cross-platform reimplementation and update of the grainscape package (http://grainscape.r-forge.r-project.org).

To cite grainscape in publications, see citation("grainscape").

Installation

From CRAN

install.packages("grainscape")

From GitHub

  1. Install development libraries: building packages from source requires the appropriate development libraries for your operating system.

See here for more details.

- *Windows:* install [Rtools](https://cran.r-project.org/bin/windows/Rtools/).
- *macOS:* install Xcode commandline tools from the terminal: `xcode-select --install`. 
- *Debian/Ubuntu Linux:* ensure `r-base-dev` is installed.
  1. Install from GitHub:

    #install.packages("devtools")
    library("devtools")
    install_github("achubaty/grainscape")

Reporting bugs

Contact us via the package GitHub site: https://github.com/achubaty/grainscape/issues.

Contributions

This Git repository uses the Git Flow branching model (the git flow extension is useful for this). The development branch contains the latest contributions and other code that will appear in the next release, and the master branch contains the code of the latest release, which is exactly what is currently on CRAN.

To make a contribution to the package, just send a pull request. When you send your PR, make sure development is the destination branch on the grainscape repository. Your PR should pass R CMD check --as-cran, which will also be checked by GitHub Actions when the PR is submitted.

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Version

Install

install.packages('grainscape')

Monthly Downloads

240

Version

0.4.3

License

GPL (>= 2)

Issues

Pull Requests

Stars

Forks

Maintainer

Alex Chubaty

Last Published

September 1st, 2020

Functions in grainscape (0.4.3)

grainscape-maps

Test maps included with grainscape
.gFinal

.gFinal
gsMPGstitch

grainscape: Defunct
gsGOC

grainscape: Deprecated
grainscape-package

Landscape Connectivity, Habitat, and Protected Area Networks
threshold

Produce a minimum planar graph (MPG) at multiple scales
grain-class

The grain class
ggGS

Prepare data in MPG and grain objects for use with ggplot2
grain

Extract a grain of connectivity (GOC) tessellation at a given scale
goc-class

The goc class
show,goc-method

Show a grainscape object
theme_grainscape

A ggplot2 theme for grainscape
plot,corridor,ANY-method

Plot quick visualizations of grainscape objects
GOC

Produce a grains of connectivity model at multiple scales (patch-based or lattice GOC)
MPG

Extract a minimum planar graph (MPG) model from a landscape resistance surface
hce-class

The hce class
distance

Find the grains of connectivity network distance
export

Export spatial data from MPG and GOC models
.habConnRcpp

Habitat connectivity engine (C++)
point

Identify the polygons containing locations in grains of connectivity (GOC) tessellations
graphdf

Produce a data.frame containing the structure and associated attributes
.habConnEngine

Habitat connectivity engine
mpg-class

The mpg class
patchFilter

Filter out patches smaller than a specified area
corridor-class

The corridor class
corridor

Visualize corridors between two points using a grains of connectivity (GOC)
$

Extract or Replace Parts of an Object