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UniprotR (version 2.3.0)

Retrieving Information of Proteins from Uniprot

Description

Connect to Uniprot to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication .

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Version

Install

install.packages('UniprotR')

Monthly Downloads

577

Version

2.3.0

License

GPL-3

Issues

0

Pull Requests

3

Stars

68

Forks

18

Maintainer

Mohamed Soudy

Last Published

August 27th, 2023

Functions in UniprotR (2.3.0)

GetExpression

Connect and parse UniProt Expression information.
GetProteinFunction

Connect and parse UniProt Protein Function information.
GetPublication

Connect and parse UniProt Publication about a protein information.
GetProteinInteractions

Connect and parse UniProt protein Interactions information.
Plot.GOMolecular

Connect and parse UniProt information.
GetProteinGOInfo

Connect and parse UniProt proteins gene ontology information.
Plot.GOSubCellular

Connect and parse UniProt information.
GetSubcellular_location

Connect and parse UniProt protein Subcellular location information.
PlotAcidity

Connect and parse UniProt information.
GetStructureInfo

Connect and parse UniProt protein Structure information.
PlotCharge

Connect and parse UniProt information.
Goparse

Connect and parse UniProt information.
GetproteinNetwork_all

Connect and parse stringdb information.
GetSequences

Connect and parse UniProt Sequences information.
HandleBadRequests

Handle bad requests This Function is used to handle possible errors when trying to get url response.
Pathway.Enr

Connect and parse UniProt information
GetSequenceIso

Connect and parse UniProt Sequences information.
PlotGravy

Connect and parse UniProt information.
PlotPhysicochemical

Connect and parse UniProt information.
GetpdbStructure

Connect and parse UniProt information.
PlotproteinExist

Connect and parse UniProt information.
GetproteinNetwork

Connect and parse stringdb information.
PlotEnrichedPathways

Connect and parse UniProt information
PlotGOAll

Connect and parse UniProt information.
GetSeqLength

Connect and parse UniProt Sequences information.
PlotChromosomeInfo

Connect and parse UniProt information.
PlotEnrichedGO

Connect and parse UniProt information
PlotproteinStatus

Connect and parse UniProt information.
PlotGOBiological

Connect and parse UniProt information.
ProcessAcc

Connect and parse UniProt information.
PlotProteinGO_cel

Connect and parse UniProt information.
PlotGenesNetwork

Connect and parse UniProt information.
PlotProteinGO_bio

Connect and parse UniProt information.
GetProteomeFasta

Connect and DOWNLOAD Proteome info.
PlotProteinGO_molc

Connect and parse UniProt information.
PlotGoterms

Connect and parse UniProt information.
PlotGoInfo

Connect and parse UniProt information.
GetProteomeInfo

Connect and DOWNLOAD Proteome info.
PlotProteinTaxa

Connect and parse UniProt information.
ConstructLocTree

Connect and parse UniProt information.
Enrichment.KEGG

Connect and parse UniProt information
GETSeqFastaUniprot

Connect and parse UniProt information.
Enrichment.CC

Connect and parse UniProt information
ConvertID

Connect and parse UniProt database identifiers information.
Enrichment.REAC

Connect and parse UniProt information
Get.diseases

Connect and parse UniProt information.
Enrichment.MF

Connect and parse UniProt information
Enrichment.BP

Connect and parse UniProt information
ConstructGenesTree

Connect and parse UniProt information.
GetProteinAnnontate

Connect and parse UniProt information.
GetMiscellaneous

Connect and parse UniProt Miscellaneous information.
GetNamesTaxa

Connect and parse UniProt Names Taxa information.
GetAccessionList

Connect and parse UniProt information.
GetFamily_Domains

Connect and parse UniProt Family Domains information.
GetGeneral_Information

Connect and parse UniProt General Information.
GetPTM_Processing

Connect and parse UniProt PTM_Processsing information.
GetPathology_Biotech

Connect and parse UniProt Pathology_Biotech information.