allocate_shifts_from_regimes

a phylogenetic tree, class <code><a rd-options="ape" href="/link/phylo?package=PhylogeneticEM&version=1.0.0&to=ape" data-mini-rdoc="ape::phylo">phylo</a></code>.

phylo

: vector of size (ntaxa + nNodes) of the regimes of each node
and tip.

regimes


<code>allocate_shifts_from_regimes</code> returns the position of the shifts induced
by the allocation of the regimes. Only works in an "infinite site" model.



Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

allocate_shifts_from_regimes function

a phylogenetic tree, class <code><a rd-options='ape' href='phylo'>phylo</a></code>.

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allocate_shifts_from_regimes: Allocation of shifts to edges

Description

Usage

Arguments

Value