annmap (version 1.14.0)

annmapDetails: annmap 'details' functions

Description

Get detailed annotations for the specified features.

Usage

arrayDetails( ids, as.data.frame=FALSE ) chromosomeDetails( ids, as.data.frame=FALSE ) domainDetails( ids, as.data.frame=FALSE ) estExonDetails( ids, as.data.frame=FALSE ) estGeneDetails( ids, as.data.frame=FALSE ) estTranscriptDetails( ids, as.data.frame=FALSE ) exonDetails( ids, as.data.frame=FALSE ) geneDetails( ids, as.data.frame=FALSE ) predictionTranscriptDetails( ids, as.data.frame=FALSE ) probeDetails( ids, as.data.frame=FALSE ) probesetDetails( ids, as.data.frame=FALSE ) proteinDetails( ids, as.data.frame=FALSE ) synonymDetails( ids, as.data.frame=FALSE ) transcriptDetails( ids, as.data.frame=FALSE )

Arguments

ids

Database identifiers for the features of interest

as.data.frame

If FALSE, data will be converted to a GRanges object if possible, otherwise a data.frame

Value

Results in an GRanges object (or a data.frame if TRUE is passed for the second parameter), one \'row\' per feature, containing detailed annotations.

See Also

annmapTo annmapAll annmapRange annmapUtils annmapFilters GRanges

Examples

  if(interactive()) {
    annmapConnect()
    geneDetails(symbolToGene("TP53"))
  }