yCrypticRNAs (version 0.99.2)

annotationsSet: Create a geneAnnotation object.

Description

Create a geneAnnotation object containing the informations on chromosomes, start and end positions, strand, score and name of genes.

Usage

annotationsSet(biomart = "ENSEMBL_MART_ENSEMBL", dataset = "scerevisiae_gene_ensembl", host = "www.ensembl.org")

Arguments

biomart

BioMart database name you want to connect to.

dataset

Dataset you want to use.

host

Host to connect to.

Value

An object of class geneAnnotation with the following components:

chromosome

Gene chromosome.

start

Gene transcription start site.

end

Gene transcription termination site.

name

Gene name.

score

Gene score.

strand

Gene strand.

Details

Please see useMart for further information.

Examples

annotationsSet()