as.segsites.GENOME

The <code>GENOME</code> data from <pkg>PopGenome</pkg>.

data

Only import synonymous SNPs if set to <code>TRUE</code>.
This requires that <pkg>PopGenome</pkg> knows where coding regions are., e.g.
by using gff files.

only_synonymous

Using this function, you can convert genetic data imported with the package
<pkg>PopGenome</pkg> into coala's segsites format. See <code><a href="/link/as.segsites?package=coala&version=0.3.0" rd-options="" data-mini-rdoc="coala::as.segsites">as.segsites</a></code>
for general information on converting genetic data for coala.

Coalescent simulators can rapidly simulate biological sequences
    evolving according to a given model of evolution.
    You can use this package to specify such models, to conduct the simulations
    and to calculate additional statistics from the results.
    It relies on existing simulators for doing the simulation, and currently
    supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites
    mutation models by combining the simulators with the program 'seq-gen'.

as.segsites.GENOME: Convert PopGenome Data into Coala's Format

Description

Usage

Arguments

Details