attachBgrd-methods

attachBgrd

removeBgrd-methods

removeBgrd

Object of class <code>"DataTreeSet"</code>.

object

Object of class <code>"list"</code> representing the names of the 
 <code><a rd-options="" href="/link/ROOT?package=xps&version=1.32.0" data-mini-rdoc="xps::ROOT">ROOT</a></code> background trees.

treenames

Attach/remove background intensities to/from <code><a rd-options="" href="/link/DataTreeSet?package=xps&version=1.32.0" data-mini-rdoc="xps::DataTreeSet">DataTreeSet</a></code>.Usage<code>attachBgrd(object, treenames = "*")</code><code>removeBgrd(object)</code>

methods

The package handles pre-processing, normalization, filtering
and analysis of Affymetrix GeneChip expression arrays, including exon
arrays (Exon 1.0 ST: core, extended, full probesets), gene arrays (Gene 1.0 ST)
and plate arrays on computers with 1 GB RAM only. It imports Affymetrix
.CDF, .CLF, .PGF and .CEL as well as annotation files, and computes e.g. RMA,
MAS5, FARMS, DFW, FIRMA, tRMA, MAS5-calls, DABG-calls, I/NI-calls. It is an R wrapper to
XPS (eXpression Profiling System), which is based on ROOT, an object-oriented
framework developed at CERN. Thus, the prior installation of ROOT is a prerequisite
for the usage of this package, however, no knowledge of ROOT is required.
ROOT is licensed under LGPL and can be downloaded from http://root.cern.ch.

Christian Stratowa

Processing and Analysis of Affymetrix Oligonucleotide Arrays
including Exon Arrays, Whole Genome Arrays and Plate Arrays

attachBgrd-methods function

Object of class <code>"list"</code> representing the names of the 
 <code><a rd-options='' href='ROOT'>ROOT</a></code> background trees.

Attach/remove background intensities to/from <code><a rd-options='' href='DataTreeSet'>DataTreeSet</a></code>.

Usage

<code>attachBgrd(object, treenames = "*")</code>

<code>removeBgrd(object)</code>

attachBgrd-methods: Attach/Remove Background Intensities

Description

Arguments

Value

Details

See Also