Learn R Programming
⚠️There's a newer version (1.3.10) of this package.Take me there.

MareyMap (version 1.3.6)

Estimation of Meiotic Recombination Rates Using Marey Maps

Description

Local recombination rates are graphically estimated across a genome using Marey maps.

Copy Link

Version

Install

install.packages('MareyMap')

Monthly Downloads

472

Version

1.3.6

License

GPL (>= 2)

Maintainer

Aurélie Siberchicot

Last Published

December 4th, 2020

Functions in MareyMap (1.3.6)

MMSlidingWindow-class

Class "MMSlidingWindow" Interpolation method plug-in for MareyMap
Caenorhabditis_elegans

The marey map for the species Caenorhabditis_elegans
Interpolation-class

Class "Interpolation"
MMLoess-class

Class "MMLoess". Interpolation method plug-in for MareyMap
Drosophila_melanogaster

The marey map for the species Drosophila melanogaster
InterpolationParam-methods

Methods for Function InterpolationParam in Package 'MareyMap'
InterpolationParam-class

Class "InterpolationParam"
MMSpline3-class

Class "MMSpline3" Interpolation using cubic splines
Arabidopsis_thaliana

The marey map for the species Arabidopsis thaliana
Homo_sapiens

The marey map for the species Homo sapiens (female, male and mean of the two)
MareyMap-class

Class "MareyMap"
MapSet-class

Class "MapSet"
name-methods

Accessor for slot name.
paramDefault-methods

Accessors for slot paramDefault
physicalPositions-methods

Accessors for the slot physicalPositions
MapSet-methods

Constructor for the class MapSet.
MareyMap-methods

Constructor for object of the class MareyMap.
markerValidity-methods

accessors for slot markerValidity
MapCollection-methods

Constructor for class MapCollection
MapCollection-class

Class "MapCollection"
createOrder-methods

createOrder
markerNames-methods

Accessors for the class markerNames.
plotMarkers-methods

plotMarkers
argList-methods

Methods for function argList in package 'MareyMap'
mapName-methods

accessors for the slot mapName
mapNames-methods

mapNames
paramName-methods

Accessors for the slot paramName.
paramDesc-methods

Accessors for the slot paramDesc
color-methods

Accessors for slot color in package 'MareyMap'
plotRate-methods

plotRate
paramFun-methods

accessors for the slot paramFun
geneticDistances-methods

Accessors for slot geneticDistances
interpolate-methods

interpolate
getInterList-methods

returns a list of interpolation methods.
paramMin-methods

Accessors for slot paramMin.
query-methods

Methods for Function query
rates-methods

Accessors for the slot rates
setName-methods

Accessors for the slot setName.
paramMax-methods

Accessors for the slot paramMax.
interpolation-methods

set or returns an interpolation.
startMareyMapGUI-methods

MareyMapGUI launcher
plotModel-methods

plotModel
registerInterpolationMethod-methods

registerInterpolationMethods
paramType-methods

Accessors for the slot paramType.
interpolations-methods

accessors for slot interpolations
plotRates-methods

plotRates
persistent-methods

Accessors for the slot persistent.
paramValues-methods

Accessor for the slot paramValues.
textFile-methods

textFile
userParam-methods

userParam
validPositions-methods

validPositions
setNames-methods

setNames
plotModels-methods

plotModels
visible-methods

Accessors for the slot visible
removeMarker-methods

removeMarker