This function returns a ggplot object with an annotated plot of a response_spct object.
# S3 method for cps_spct
autoplot(object, ...,
w.band = getOption("photobiology.plot.bands", default = list(UVC(),
UVB(), UVA(), PAR())), range = NULL, unit.out = "cps",
pc.out = FALSE, label.qty = "mean", span = NULL,
annotations = NULL, time.format = "", tz = "UTC", norm = NULL,
text.size = 2.5, idfactor = NULL, ylim = c(NA, NA),
object.label = deparse(substitute(object)), na.rm = TRUE)a cps_spct object.
in the case of collections of spectra, additional arguments passed to the plot methods for individual spectra, otherwise currently ignored.
a single waveband object or a list of waveband objects.
an R object on which range() returns a vector of length 2, with min annd max wavelengths (nm).
character IGNORED.
logical, if TRUE use percents instead of fraction of one
character string giving the type of summary quantity to use for labels, one of "mean", "total", "contribution", and "relative".
a peak is defined as an element in a sequence which is greater than all other elements within a window of width span centered at that element.
a character vector ("summaries" is ignored).
character Format as accepted by strptime.
character Time zone to use for title and/or subtitle.
numeric normalization wavelength (nm) or character string "max" for normalization at the wavelength of highest peak.
numeric size of text in the plot decorations.
character Name of an index column in data holding a
factor with each spectrum in a long-form multispectrum object
corresponding to a distinct spectrum. If idfactor=NULL the name of
the factor is retrieved from metadata or if no metadata found, the
default "spct.idx" is tried.
numeric y axis limits,
character The name of the object being plotted.
logical.
a ggplot object.
Other autoplot methods: autoplot.calibration_spct,
autoplot.filter_spct,
autoplot.object_spct,
autoplot.raw_spct,
autoplot.reflector_spct,
autoplot.response_spct,
autoplot.source_spct,
autoplot.waveband