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breakaway (version 3.0)

betta_pic: function for plotting total diversity

Description

A simple plotting interface for comparing total diversity across samples or a covariate gradient.

Usage

betta_pic(y, se, x=1:length(y), ylimu=NA, myy=NA, mymain=NA, mycol=rep("black", length(y)), labs=NA, mypch=rep(16, length(y)), myxlim=c(0.8*min(x, na.rm=T), 1.2*max(x, na.rm=T)))

Arguments

y
A vector of estimates of total diversity. Other parameter estimates are accessible; this method may be used for plotting any parameter estimates..
se
The standard errors in y, the diversity (or other parameter's) estimates.
x
A vector of covariates to form the x-coordinates of the intervals. If no argument is given, defaults to the order.
ylimu
The upper endpoint of the y-axis.
myy
A label for the y-axis. Default is none.
mymain
A main title for the plot. Default is none.
mycol
Colors for the plotting points. Default is black.
labs
x-axis labels. Default is none (non x-axis plotted).
mypch
Plotting characters for the estimates. Defaults to circles.
myxlim
A vector of x-axis limits. Default is 0 to 10% greater than the maximum x value.

References

Willis, A., Bunge, J., and Whitman, T. (2015). Inference for changes in biodiversity. arXiv preprint.

See Also

betta

Examples

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