fulltext (version 0.1.6)

bmc_xml: Download full text xml of a BMC paper.

Description

Download full text xml of a BMC paper.

Usage

bmc_xml(obj = NULL, uris = NULL, dir = NULL, raw = FALSE, ...)

Arguments

obj

(optional) An object of class bmc, from a call to bmc_search

uris

(optional) A uri to a xml file of a BMC paper

dir

(optional) A directory to save to. The file extension is forced to .xml, and the file name will be

raw

(logical) If TRUE, returns raw text, but if FALSE, parsed XML. Default: FALSE

...

Futher args passed on to GET for debugging curl calls.

Examples

## Not run: 
# uri = 'http://www.biomedcentral.com/content/download/xml/1471-2393-14-71.xml'
# uri = 'http://www.springerplus.com/content/download/xml/2193-1801-3-7.xml'
# uri = 'http://www.microbiomejournal.com/content/download/xml/2049-2618-2-7.xml'
# bmc_xml(uris=uri)
# bmc_xml(uris=uri, dir='~/')
# bmc_xml(uris=uri, verbose())
# 
# # from using bmc_search
# out <- bmc_search(terms = 'science', limit=5)
# dat <- bmc_xml(out)
# length(dat)
# dat <- Filter(Negate(is.null), dat)
# length(dat)
# dat
# 
# # curl debugging, and other parameters passed to httr::GET()
# uri = 'http://www.microbiomejournal.com/content/download/xml/2049-2618-2-7.xml'
# res <- bmc_xml(uris=uri, config=verbose())
# # res <- bmc_xml(uris=uri, config=timeout(0.1))
# 
# uri1 = 'http://www.biomedcentral.com/content/download/xml/1471-2393-14-71.xml'
# uri2 = 'http://www.springerplus.com/content/download/xml/2193-1801-3-7.xml'
# uri3 = 'http://www.microbiomejournal.com/content/download/xml/2049-2618-2-7.xml'
# res <- bmc_xml(uris=list(uri1, uri2, uri3), config=progress())
# ## End(Not run)