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kmed (version 0.4.2)

Distance-Based k-Medoids

Description

Algorithms of distance-based k-medoids clustering: simple and fast k-medoids, ranked k-medoids, and increasing number of clusters in k-medoids. Calculate distances for mixed variable data such as Gower, Podani, Wishart, Huang, Harikumar-PV, and Ahmad-Dey. Cluster validation applies internal and relative criteria. The internal criteria includes silhouette index and shadow values. The relative criterium applies bootstrap procedure producing a heatmap with a flexible reordering matrix algorithm such as complete, ward, or average linkages. The cluster result can be plotted in a marked barplot or pca biplot.

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Version

Install

install.packages('kmed')

Monthly Downloads

566

Version

0.4.2

License

GPL-3

Maintainer

Weksi Budiaji

Last Published

August 29th, 2022

Functions in kmed (0.4.2)

clustheatmap

Consensus matrix heatmap from A consensus matrix
csv

Centroid shadow value (CSV) index and plot
distNumeric

A pair distance for numerical variables
consensusmatrix

Consensus matrix from A matrix of bootstrap replicates
barplotnum

Barplot of each cluster for numerical variables data set
clust4

4-clustered data set
clustboot

Bootstrap replications for clustering alorithm
clust5

5-clustered data set
globalfood

Global food security index
rankkmed

Rank k-medoid algorithm
fastkmed

Simple and fast k-medoid algorithm
matching

A pair distance for binary/ categorical variables
heart

Heart Disease data set
pcabiplot

Biplot of a PCA object
sil

Silhouette index and plot
inckmed

Increasing number of clusters in k-medoids algorithm
msv

Medoid shadow value (MSV) index and plot
skm

Simple k-medoid algorithm
cooccur

Co-occurrence distance for binary/ categorical variables data
distmix

Distances for mixed variables data set