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netbenchmark (version 1.4.2)

Benchmarking of several gene network inference methods

Description

This package implements a benchmarking of several gene network inference algorithms from gene expression data.

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Version

Version

1.4.2

License

CC BY-NC-SA 4.0

Maintainer

Pau Bellot

Last Published

February 15th, 2017

Functions in netbenchmark (1.4.2)

RegisterWrapper

Wrapper (un)registration routine
pcit.wrap

pcit wrapper function
GeneNet.wrap

GeneNet wrapper function
aracne.wrap

aracne wrapper function
mutrank.wrap

Mutual Rank wrapper function
datasource.subsample

Subsampling datasource procedure
comp.metr

Compute metrics
netbenchmark.data

Benchmarking of several network inference algorithms for your own data
zscore.wrap

Zscore wrapper function
c3net.wrap

c3net wrapper function
mrnet.wrap

mrnet wrapper function
ntb_globals

Available wrappers in the package of the fast methods
rate

Inference Validation
netbenchmark-package

Benchmarking of several inference networks methods
netbenchmark

Benchmarking of several network inference algorithms from data
experiments.bench

Noise sensitivity benchmark
noise.bench

Noise sensitivity test
Genie3.wrap

Genie3 wrapper function
zsc

Z-score c++ function
clr.wrap

CLR wrapper function
evaluate

Inference Evaluation
mrnetb.wrap

mrnetb wrapper function