calc_dists_dotprods: Calculate distances and dot products between two sets of neurons
Description
Calculate distances and dot products between two sets of neurons
Usage
calc_dists_dotprods(query_neurons, target_neurons, subset = NULL, ignoreSelf = TRUE, ...)
Arguments
query_neurons
a neuronlist to use for calculating
distances and dot products. target_neurons
a further neuronlist to use for
calculating distances and dot products. subset
a data.frame specifying which neurons in
query_neurons and target_neurons should be compared, with
columns specifying query and target neurons by name, with one row for each
pair. If unspecified, this defaults to an all-by-all comparison. ignoreSelf
a Boolean indicating whether to ignore comparisons of a
neuron against itself (default TRUE).
Value
A list, one element for for pair of neurons with a 2 column
data.frame containing one column of distances and s secon of absolute dot
products.
Details
Distances and dot products are the raw inputs for constructing
scoring matrices for the nblast search algorithm.