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vegan (version 1.6-7)
Community Ecology Package
Description
Ordination methods and other useful functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
110,476
Version
1.6-7
License
GPL2
Maintainer
Jari Oksanen
Last Published
June 6th, 2025
Functions in vegan (1.6-7)
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make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
ordisurf
Smooths Variables and Plots Contours on Ordination.
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
mantel
Mantel and Partial Mantel Tests for Dissimilarity Matrices
fisherfit
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data
radfit
Rank -- Abundance or Dominance / Diversity Models
scores
Get Species or Site Scores from an Ordination
specpool
Extrapolated Species Richness in a Species Pool
vegan-internal
Internal vegan functions
vegemite
Prints a Compact, Ordered Vegetation Table
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
ordiplot
Alternative plot and identify Functions for Ordination
procrustes
Procrustes Rotation of Two Configurations
specaccum
Species Accumulation Curves
humpfit
No-interaction Model for Hump-backed Species Richness vs. Biomass
metaMDS
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
dune
Vegetation and Environment in Dutch Dune Meadows.
anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
vegdist
Dissimilarity Indices for Community Ecologists
envfit
Fits an Environmental Vector or Factor onto an Ordination
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
varespec
Vegetation and environment in lichen pastures
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
anosim
Analysis of Similarities
capscale
[Partial] Constrained Analysis of Principal Coordinates
distconnected
Connectedness and Minimum Spanning Tree for Dissimilarities
diversity
Ecological Diversity Indices and Rarefaction Species Richness
decostand
Standardizaton Methods for Community Ecology
BCI
Barro Colorado Island Tree Counts
ordihull
Add Graphical Items to Ordination Diagrams
deviance.cca
Statistics Resembling Deviance and AIC for Constrained Ordination
predict.cca
Prediction and Diagnostic Tools for Constrained Ordination (CCA, RDA)
bioenv
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
read.cep
Reads a CEP (Canoco) data file
rankindex
Compares Dissimilarity Indices for Gradient Detection
wascores
Weighted Averages Scores for Species