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epinet (version 2.1.8)

Epidemic/Network-Related Tools

Description

A collection of epidemic/network-related tools. Simulates transmission of diseases through contact networks. Performs Bayesian inference on network and epidemic parameters, given epidemic data.

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Version

Install

install.packages('epinet')

Monthly Downloads

296

Version

2.1.8

License

GPL-2

Maintainer

Chris Groendyke

Last Published

February 13th, 2018

Functions in epinet (2.1.8)

epinet-internal

Internal epinet Objects

epi2newick

Prints a transmission tree in Newick format.

summary.epidemic

Summarize simulated epidemic

summary.epinet

Summarize posterior samples from epinet object

Hagelloch

Hagelloch measles data.

MCMCcontrol

Set control parameters for epinet MCMC algorithm

print.epinet

Print basic information about an epinet object

print.epidemic

Prints an epidemict object

SEIR.simulator

Simulate an epidemic on a contact network

priorcontrol

Set prior distributions and hyperparameters for epinet MCMC algorithm

write.epinet

Writes posterior samples from an epinet object to an output file

BuildX

Build a dyadic covariate matrix (X)

epinet

Uses epidemic data to perform Bayesian inference on a contact network

ess

Calculate the Effective Sample Size

plot.epidemic

Plot the spread of an epidemic

plot.epinet

Plot the spread of an epidemic

SimulateDyadicLinearERGM

Simulates an ERGM network using given covariate values