Arguments
mcmc.objects
a list of MCMC or runjags objects, all with the same number of
chains and matching variable names, or a single MCMC object/list or runjags object. No default.
thin
an integer to use to thin the (final) MCMC object by, in
addition to any thinning already applied to the objects before being
passed to combine.mcmc. Ignored if return.samples is specified (!is.na).
Default 1 (no additional thinning is performed).
return.samples
the number of samples to return after thinning.
The chains will be thinned to as close to this minimum value as
possible, and any excess iterations discarded. Supersedes thin if
both are specified. Ignored if niter(mcmc.objects) < return.samples.
De
collapse.chains
option to combine all MCMC chains into a single
MCMC chain with more iterations. Can be used for combining chains prior
to calculating results in order to reduce the Monte Carlo error of
estimates. Default TRUE if a single mcmc.object is provided, or FA
vars
an optional character vector of variable names to extract.
If supplied, only variable names in the MCMC object/list supplied with a partial
match to anything in 'vars' will be summarised/plotted/extracted. Note
that regular expressions are not allowed,