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HH (version 3.1-21)

Statistical Analysis and Data Display: Heiberger and Holland

Description

Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

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Version

Install

install.packages('HH')

Monthly Downloads

6,252

Version

3.1-21

License

GPL (>= 2)

Maintainer

Richard Heiberger

Last Published

August 23rd, 2015

Functions in HH (3.1-21)

extra

Miscellaneous functions that I wish were in or consistent between S-Plus and R.
hov

Homogeneity of Variance
cp.calc

Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
F.curve

plot a chisquare or a F-curve.
glhtWithMCP.993

Retain averaging behavior that was previously available in glht.
if.R

Conditional Execution for R or S-Plus
formatHex

Format numbers in binary and hex and decimal format, and scan binary and hex.
diag.maybe.null

Returns a value for the diagonal of NA and NULL arguments.
likertMosaic

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
do.formula.trellis.xysplom

Interprets model formulas for xysplom and extended bwplots
NormalAndTPower

Construct a power graph based on the NTplot.
dchisq.intermediate

Intermediate f and chisq functions to simplify writing for both R and S-Plus.
LikertPercentCountColumns

Display likert plots with percents in the first column of panels and counts in the second column of panels.
col3x2

col3x2 color dataset
grid.yaxis.hh

make x- and y-axis labels
bivariateNormal

Plot the bivariate normal density using wireframe for specified rho.
AEdotplot.data.frame

AE (Adverse Events) dotplot of incidence and relative risk, support functions
HHscriptnames

Find absolute pathname of a script file for the HH book in the HH package.
col.hh

Initializing Trellis Displays
panel.cartesian

trellis panel function, with labeled rows and columns and without strip labels.
GSremove

Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
hh

Resolve filenames relative to the HH directory.
gof.calculation

Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus.
HH.regsubsets

Display tabular results for Best Subsets Regression.
plot.mmc.multicomp

MMC (Mean--mean Multiple Comparisons) plot.
lm.regsubsets

Evaluate lm model with highest adjusted $R^2$.
anova.ancovaplot

ANOVA table for a c("ancovaplot","trellis") object.
legendGrob2wt

place separate keys to the left of each row of a trellis
intxplot

Interaction plot, with an option to print standard error bars.
anovaMean

ANOVA table from the group sample sizes, means, and standard deviations.
lmatPairwise

lmatPairwise
axis.i2wt

specialized axis function for interaction2wt.
panel.dotplot.tb

Dotplot with evenly spaced tiebreakers.
arima.diag.hh

Repair design error in S-Plus arima.diag
combineLimits.trellisvector

Combine limits on a one-dimensional trellis object.
plot.hov

Homogeneity of Variance Plot
aovSufficient

Analysis of variance from sufficient statistics for groups.
interval

Prediction and Confidence Intervals for glm Objects
OddsRatio

Calculate or plot the odds ratio for a 2x2 table of counts.
ae.dotplot

AE (Adverse Events) dotplot of incidence and relative risk
NormalAndTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals.
npar.arma

Count the number of parameters in an ARIMA model specification.
ResizeEtc.likertPlot

Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
panel.bwplot.superpose

Panel function for bwplot that displays an entire box in the colors coded by groups.
ResizeEtc

Display multiple independent trellis objects on the same coordinated scale.
useOuterStripsT2L1

Three-factor generalization of latticeExtra::useOuterStrips
ladder

Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
interaction.positioned

interaction method for positioned factors.
as.matrix.listOfNamedMatrices

Convert a list of matrices to a single matrix
sufficient

Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
push.vp.hh

push and pop a grid viewport, turn clipping off, change scale.
Discrete4

Discrete with four levels color dataset.
latticeresids

Subroutine used by residual.plots.lattice
multicomp.reverse

Force all comparisons in a "multicomp" object to have the same sign.
ci.plot

Plot confidence and prediction intervals for simple linear regression
residual.plots

Residual plots for a linear model.
rbind.trellis

Extend matrix reshaping functions to trellis objects.
datasets

Datasets for Statistical Analysis and Data Display, Heiberger and Holland
panel.acf

Panel functions for tsdiagplot.
panel.confintMMC

Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
matrix.trellis

Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
interaction2wt

Plot all main effects and twoway interactions in a multifactor design
regrresidplot

Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
logit

Logistic and odds functions and their inverses.
emptyMainLeftAxisLeftStripBottomLegend

Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
print.tsdiagplot

Print a "tsdiagplot" object.
panel.bwplot.intermediate.hh

Panel functions for bwplot.
lm.case

case statistics for regression analysis
AEdotplot

AE (Adverse Events) dotplot of incidence and relative risk
ancova

Compute and plot oneway analysis of covariance
arma.loop

Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
print.latticeresids

Print a latticeresids object.
diagplot5new

Transpose of ECDF for centered fitted values and residuals from a linear model.
lmatRows

Find the row numbers in the lmat corresponding to the focus factor.
panel.pairs.hh

Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
position

Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
hovBF

Homogeneity of Variance: Brown--Forsyth method
partial.corr

partial correlations
mmc

MMC (Mean--mean Multiple Comparisons) plots.
pdiscunif

Discrete Uniform Distribution
defunct

Defunct Functions in Package 'HH'
showHex

Show numbers in binary and hex and decimal format
regr1.plot

plot x and y, with optional straight line fit and display of squared residuals
mmcisomeans

Functions used by mmcplot.
print.NormalAndTplot

Print method for Normal and t plots from NTplot.
cplx

Generate a sequence spanning the xlim of a lattice window.
print.TwoTrellisColumns

Print two conformable trellis plots in adjacent columns with user control of widths.
X.residuals

Residuals from the regression of each column of a data.frame against all the other columns.
tsdiagplot

Times series diagnostic plots for a structured set of ARIMA models.
panel.likert

Panel functions for likert that include a stackWidth argument
strip.background0

Turn off the coloring in the trellis strip labels. Color 0 is the background color.
mmc.mean

MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
residVSfitted

Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
seqplot.forecast

seqplot with confidence bands for the forecast region.
ancova-class

Class "ancova" Analysis of Covariance
HH-package

Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
tsacfplots

Coordinated time series and ACF and PCF plots.
mcalinfct

MCA multiple comparisons analysis (pairwise)
perspPlane

Helper functions for regr2.plot
xysplom

scatterplot matrix with potentially different sets of variables on the rows and columns.
panel.xysplom

panel method for xysplom.
as.multicomp

Support functions in R for MMC (mean--mean multiple comparisons) plots.
NTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial.
resid.squares

plot squared residuals in inches to match the y-dimension
likertColor

Selection of colors for Likert plots.
normalApproxBinomial

Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals.
ancovaplot

Analysis of Covariance Plots
residual.plots.lattice

Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
summary.arma.loop

summary and print and subscript methods for tsdiagplot and related objects.
hhpdf

R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex
as.likert

Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
mmcplot

MMC (Mean-mean Multiple Comparisons) plots in lattice.
export.eps

Exports a graph to an EPS file.
likert

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids.
multicomp.order

Update a multicomp object by ordering its contrasts.
panel.ci.plot

Default Panel Function for ci.plot
objip

loop through all attached directories looking for pattern
panel.interaction2wt

Plot all main effects and twoway interactions in a multifactor design
lmplot

Four types of residual plots for linear models.
pyramidLikert

Print a Likert plot as a Population Triangle
mmcAspect

Control aspect ratio in MMC plots to maintain isomeans grid as a square.
norm.curve

plot a normal or a t-curve with both x and z axes.
panel.isomeans

isomeans grid for MMC plots.
orthog.complete

Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
regr2.plot

3D plot of z against x and y, with regression plane fit and display of squared residuals.
as.vector.trellis

Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object.
plot.multicomp

Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
seqplot

Time series plot.
diagQQ

QQ plot of regression residuals.
mmcPruneIsomeans

MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.
strip.xysplom

strip function that is able to place the correlation or regression coefficient into the strip label.
panel.axis.right

Right-justify right-axis tick labels.
panel.bwplott

Extension to S-Plus trellis to allow transposed plots.
positioned-class

Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
vif

Calculate the Variance Inflation Factor
OneWayVarPlot

Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.